Package index • papercheck

Reading in Papers

pdf2grobid(): Convert a PDF to Grobid XML

read_grobid(): Get paper from grobid XML file

read_cermine(): Get paper from cermine XML file

read_text(): Get paper from text

paper_validate(): Validate Papers

Demo Resources

demoxml(): Get demo XML file

demopdf(): Get demo PDF file

demodir(): Get demo directory of grobid XML files

psychsci: Psychologial Science Open Access Paper Set

Search Papers

search_text(): Search text

expand_text(): Expand text

concat_tables(): Concatenate tables

info_table(): Get paper information in a table

author_table(): Get author information in a table

Module Functions

module_list(): List modules

module_help(): Get Module Help

module_info(): Get module information

module_run(): Run a module

module_report(): Report from module output

report(): Create a report

papercheck_app(): Launch Shiny App

LLM Functions

Useful functions for checking GitHub repositories

llm(): Query an LLM

llm_max_calls(): Set the maximum number of calls to the LLM

llm_model(): Set the default LLM model

llm_model_list(): List Available LLM Models

json_expand(): Expand a JSON column

OSF Functions

Useful functions for checking OSF URLs

osf_api_check(): Check OSF API Server Status

osf_check_id(): Check OSF IDs

osf_delay(): Set the OSF delay

osf_links(): Find OSF Links in Papers

osf_retrieve(): Retrieve info from the OSF by ID

summarize_contents(): Summarize Directory Contents

osf_api_calls(): Get/set the OSF API Call Count

GitHub Functions

Useful functions for checking GitHub repositories

github_config(): GitHub Configuration

github_repo(): Get Short GitHub Repo Name

github_info(): Get GitHub Repo Info

github_files(): Get File List from GitHub

github_readme(): Get README from GitHub

github_languages(): Get Languages from GitHub Repo

Integrations

openalex(): Get OpenAlex info for a paper

crossref(): Crossref info

retractionwatch: RetractionWatch data

file_types: File Types

check_orcid(): Check validity of ORCiD

get_orcid(): Get ORCiD from Name

credit_roles(): CRediT Roles

Validation Functions

validate(): Validate a module

accuracy(): Accuracy

text_features(): Text features

distinctive_words(): Get Distinctive Words

Extras

verbose(): Set or get papercheck verbosity

stats(): Check Stats