Package index • papercheck

Reading in Papers

pdf2grobid(): Convert a PDF to Grobid XML

read() read_grobid() read_cermine() read_text(): Get paper from XML or text file

paper_validate(): Validate Papers

Demo Resources

demoxml(): Get demo XML file

demopdf(): Get demo PDF file

demodir(): Get demo directory of grobid XML files

psychsci: Psychologial Science Open Access Paper Set

Search Papers

search_text(): Search text

expand_text(): Expand text

concat_tables(): Concatenate tables

info_table(): Get paper information in a table

author_table(): Get author information in a table

Module Functions

module_list(): List modules

module_help(): Get Module Help

module_info(): Get module information

module_run(): Run a module

module_report(): Report from module output

module_template(): Create a Module from a Template

report(): Create a report

papercheck_app(): Launch Shiny App

LLM Functions

llm(): Query an LLM

llm_max_calls(): Set the maximum number of calls to the LLM

llm_model(): Set the default LLM model

llm_model_list(): List Available LLM Models

llm_use(): Set or get papercheck LLM use

json_expand(): Expand a JSON column

OSF Functions

osf_api_check(): Check OSF API Server Status

osf_check_id(): Check OSF IDs

osf_delay(): Set the OSF delay

osf_file_download(): Download all OSF Project Files

osf_links(): Find OSF Links in Papers

osf_retrieve(): Retrieve info from the OSF by ID

osf_get_all_pages(): Get All OSF API Query Pages

osf_api_calls(): Get/set the OSF API Call Count

osf_preprint_list(): Get A list of preprints from the OSF

AsPredicted/ResearchBox Functions

aspredicted_links(): Find AsPredicted Links in Papers

aspredicted_retrieve(): Retrieve info from AsPredicted by URL

rbox_links(): Find ResearchBox Links in Papers

rbox_retrieve(): Retrieve info from ResearchBox by URL

GitHub Functions

github_config(): GitHub Configuration

github_repo(): Get Short GitHub Repo Name

github_info(): Get GitHub Repo Info

github_files(): Get File List from GitHub

github_readme(): Get README from GitHub

github_languages(): Get Languages from GitHub Repo

Integrations

email(): Set or get email

filetype(): Get file Type from Extension

summarize_contents(): Summarize Directory Contents

bibsearch(): Search for biblio info

bib_add_dois(): Add DOIs to bibliography

bibtex_add_dois(): Add DOIs to a bib file

openalex(): Get OpenAlex info for a paper

crossref(): Crossref info

retractionwatch() rw(): RetractionWatch data

rw_date(): Get date retractionwatch was updated

rw_update(): Update retractionwatch

check_orcid(): Check validity of ORCiD

get_orcid(): Get ORCiD from Name

orcid_person(): Get Person Details for ORCiD

credit_roles(): CRediT Roles

Validation Functions

validate(): Validate a module

accuracy(): Accuracy

text_features(): Text features

distinctive_words(): Get Distinctive Words

Extras

verbose(): Set or get papercheck verbosity

stats(): Check Stats

emojis: Emojis